Publications

Found 33 results
Author Title [ Type(Desc)] Year
Filters: Author is Ron Shamir  [Clear All Filters]
Conference Paper
Karp, R. M., & Shamir R. (1998).  Algorithms for Optical Mapping. Proceedings of the Second Annual International Conference on Computational Molecular Biology. 117-124.
Ulitzky, I.., Karp R. M., & Shamir R. (2008).  Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. Proceedings of 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008). 347-359.
Rozov, R., Shamir R., & Halperin E. (2014).  Fast Lossless Compression via Cascading Bloom Filters. 15,
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. 282-289.
Kimmel, G., Sharan R., & Shamir R. (2003).  Idetifying Blocks and Sub-Populations in Noisy SNP Data. Proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI'03). 303-319.
Rozov, R., Halperin E., & Shamir R. (2012).  MGMR: Leveraging RNA-Seq Population Data to Optimize Expression Estimation. 13,
Gat-Viks, I., Shamir R., Karp R. M., & Sharan R. (2004).  Reconstructing Chain Functions in Genetic Networks. Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
Ben-Dor, A., Karp R. M., Schwikowski B., & Shamir R. (2002).  The Restriction Scaffold Problem. Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02).
Tanay, A., Sharan R., Kupiec M., & Shamir R. (2004).  Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data. Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
Halperin, E., Kimmel G., & Shamir R. (2005).  Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy. Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). 195-203.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. 74-89.
Maron-Katz, A., Ben Simon E., Jacob Y., Rosenberg K., Karp R. M., Hendler T., et al. (2011).  Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity. Proceedings of the 4th Annual INCF Neuroinformatics Congress.
Journal Article
Karp, R. M., & Shamir R. (2000).  Algorithms for Optical Mapping.
Sharan, R., Maron-Katz A., & Shamir R. (2003).  CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data. Bioinformatics. 1787-1799.
Shamir, R., Sharan R., & Tsur D.. (2004).  Cluster Graph Modification Problems.
Kimmel, G., Sharan R., & Shamir R. (2004).  Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
Pupko, T., Sharan R., Hasegawa M.., Shamir R., & Graur D.. (2003).  Detecting Excess Radical Replacements in Phylogenetic Trees. Gene. 127-135.
Adler, I., Karp R. M., & Shamir R. (1986).  A family of simplex variants solving an m*d linear program in expected number of pivot steps depending on d only. Mathematics of Operations Research. 11(4), 570-590.
Elkon, R.., Linhart C.., Sharan R., Shamir R., & Shiloh Y.. (2003).  Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells. Genome Research. 773-780.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2005).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6), 835-846.
Pe'er, I., Pupko T., Shamir R., & Sharan R. (2004).  Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3), 590-607.
Davidovich, O.., Kimmel G., Halperin E., & Shamir R. (2009).  Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection. Communications in Information and Systems. 9(3), 269-282.
Shamir, R., & Sharan R. (2004).  Optimal Fully Dynamic Algorithms for Cograph Recognition. 329-340.

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