Publications
(2003).
(2003).
Towards Optimally Multiplexed Applications of Universal Arrays.
Journal of Computational Biology. 11, 477-493.
(2004). Torque: Topology-Free Querying of Protein Interaction Networks.
Nucleic Acids Research. 37, 106-108.
(2009). Torque: Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). Scoring Clustering Solutions by Their Biological Relevance.
Bioinformatics. 2381-2389.
(2003). Prediction of Phenotype Information from Genotype Data.
Communications in Information and Systems. 10(2), 99-114.
(2010).
(2004).
(2004). A Note on Optimally Phasing Long Genomic Regions Using Local Haplotype Predictions.
Journal of Bioinformatics and Computational Biology. 4(3), 639-647.
(2006). Incomplete Directed Perfect Phylogeny.
SIAM Journal on Computing. 33(3), 590-607.
(2004). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Journal of Computational Biology. 12(6), 835-846.
(2005). Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells.
Genome Research. 773-780.
(2003). Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks.
Journal of Computational Biology. 13, 133-144.
(2006). A Discriminative Model for Identifying Spatial Cis-Regulatory Modules.
Journal of Computational Biology.
(2005). Detecting Excess Radical Replacements in Phylogenetic Trees.
Gene. 127-135.
(2003). CREME: Cis-Regulatory Module Explorer for the Human Genome.
32, W253-W256.
(2004). Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification.
INFORMS Journal on Computing.
(2004).
(2004). CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data.
Bioinformatics. 1787-1799.
(2003). Towards Optimally Multiplexed Applications of Universal DNA Tag Systems.
Proceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB'03).
(2003).
(2009). Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data.
Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
(2004).