Publications
Multiplexing Schemes for Generic SNP Genotyping Assays.
Proceedings of PSB'04. 140-151.
(2004).
(2004). Optimally Phasing Long Genomic Regions using Local Haplotype Predictions.
Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes. 13-16.
(2004).
(2004). Reconstructing Chain Functions in Genetic Networks.
Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
(2004). Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data.
Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
(2004). Towards Optimally Multiplexed Applications of Universal Arrays.
Journal of Computational Biology. 11, 477-493.
(2004). CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data.
Bioinformatics. 1787-1799.
(2003). Conserved Pathways Within Bacteria and Yeast as Revealed by Global Protein Network Alignment.
Proceedings of the National Academy of Sciences of the United States of America. 100(20), 11394-11399.
(2003). CRÈME: A Framework for Identifying Cis-Regulatory Modules in Human-Mouse Conserved Segments.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology (ISMB'03). 1283-1291.
(2003). Detecting Excess Radical Replacements in Phylogenetic Trees.
Gene. 127-135.
(2003).
(2003). Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells.
Genome Research. 773-780.
(2003).
(2003). Idetifying Blocks and Sub-Populations in Noisy SNP Data.
Proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI'03). 303-319.
(2003). Scoring Clustering Solutions by Their Biological Relevance.
Bioinformatics. 2381-2389.
(2003). Towards Optimally Multiplexed Applications of Universal DNA Tag Systems.
Proceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB'03).
(2003).