Publications
Haplotype Inference in Complex Pedigrees.
108-120.
(2009). HAPLOPOOL: Improving Haplotype Frequency Estimation Through DNA Pools and Phylogenetic Modeling.
Bioinformatics. 23(22), 3048-3055.
(2007). Haplofreq - Estimating Haplotype Frequencies Efficiently.
Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB'05). 553-568.
(2005). Genotyping Common and Rare Variation Using Overlapping Pool Sequencing.
Proceedings of the First Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq). 26-27.
(2011). Genotyping Common and Rare Variation Using Overlapping Pool Sequencing.
BMC Informatics. 12,
(2011). Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota.
Microbial Ecology. 61(2), 423-428.
(2011). Genomic Privacy and Limits of Individual Detection in a Pool.
Nature Genetics. 41(9), 965-967.
(2009).
(2010). Genome-Wide Association Study of Follicular Lymphoma Identifies a Risk Locus at 6p21.32.
Nature Genetics. 42(8), 661-664.
(2010). Genetic Variants at 6p21.33 Are Associated with Susceptibility to Follicular Lymphoma.
Nature Genetics. 41(8), 873-875.
(2009). A Generic Coalescent-Based Framework for the Selection of a Reference Panel for Imputation.
Genetic Epidemiology. 34(8), 773-782.
(2010). Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree Reconstruction.
Proceedings of the 33rd International Colloquium on Automata, Languages, and Programming (ICALP 2006). 667-678.
(2006).
(2014). Fast and Accurate Inference of Local Ancestry in Latino Populations.
Bioinformatics. 28(10), 1359-1367.
(2012). Estimating Local Ancestry in Admixed Populations.
The American Journal of Human Genetics. 82(2), 290-303.
(2008). Estimating Haplotype Frequencies Efficiently.
Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB'05). 553-568.
(2005). EPIQEfficient Detection of SNPSNP Epistatic Interactions for Quantitative Traits.
Bioinformatics. 30(12), i19-i25.
(2014). Efficient Reconstruction of Haplotype Structure Via Perfect Phylogeny.
Journal of Bioinformatics and Computational Biology. 1(1), 1-20.
(2003).
(2007). Dynamic Network Topology Changes in Functional Modules Predict Responses to Oxidative Stress in Yeast.
Molecular BioSystems. 5(3), 276-287.
(2009). Detection of Molecular Paths Associated with Insulitis and Type 1 Diabetes in Non-Obese Diabetic Mouse.
PLoS ONE. 4(10),
(2009). Detecting Protein Sequences via Metric Embeddings.
Proceedings of the 11th International Conference on Intelligent Systems for Molecular Biology (ISMB). 122-129.
(2003). Design of the Coronary Artery Disease Genome-Wide Replication and Meta-Analysis (CARDIoGRAM) Study--A Genome-Wide Association Meta-Analysis Involving More than 22,000 Cases and 60,000 Controls.
Circulation: Cardiovascular Genetics. 3, 475-483.
(2010).
(2010). A Comparison of Phasing Algorithms for Trios and Unrelated Individuals.
American Journal of Human Genetics. 78(3), 437-450.
(2006).