Publications
Torque: Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). Torque: Topology-Free Querying of Protein Interaction Networks.
Nucleic Acids Research. 37, 106-108.
(2009). Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). A Simplex variant solving an m*d linear program in O(min(m2, d2)) expected number of pivot steps.
Journal of Complexity. 3(4), 372-387.
(1987). Scoring Clustering Solutions by Their Biological Relevance.
Bioinformatics. 2381-2389.
(2003). The Restriction Scaffold Problem.
Journal of Computational Biology. 10(3-4), 385-398.
(2003). A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies.
American Journal of Human Genetics. 81(5), 895-905.
(2007).
(2004). Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection.
Communications in Information and Systems. 9(3), 269-282.
(2009). Incomplete Directed Perfect Phylogeny.
SIAM Journal on Computing. 33(3), 590-607.
(2004). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Journal of Computational Biology. 12(6), 835-846.
(2005). Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells.
Genome Research. 773-780.
(2003). A family of simplex variants solving an m*d linear program in expected number of pivot steps depending on d only.
Mathematics of Operations Research. 11(4), 570-590.
(1986). Detecting Excess Radical Replacements in Phylogenetic Trees.
Gene. 127-135.
(2003). Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification.
INFORMS Journal on Computing.
(2004).
(2004). CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data.
Bioinformatics. 1787-1799.
(2003).
(2000). Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity.
Proceedings of the 4th Annual INCF Neuroinformatics Congress.
(2011).
(2009). Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy.
Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). 195-203.
(2005). Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data.
Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
(2004). The Restriction Scaffold Problem.
Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02).
(2002). Reconstructing Chain Functions in Genetic Networks.
Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
(2004).