Publications

Found 33 results
Author Title [ Type(Asc)] Year
Filters: Author is Ron Shamir  [Clear All Filters]
Journal Article
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Torque: Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. Nucleic Acids Research. 37, 106-108.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2010).  Topology-Free Querying of Protein Interaction Networks. Journal of Computational Biology. 17(3), 237-252.
Adler, I., Karp R. M., & Shamir R. (1987).  A Simplex variant solving an m*d linear program in O(min(m2, d2)) expected number of pivot steps. Journal of Complexity. 3(4), 372-387.
Gat-Viks, I., Sharan R., & Shamir R. (2003).  Scoring Clustering Solutions by Their Biological Relevance. Bioinformatics. 2381-2389.
Ben-Dor, A., Karp R. M., Schwikowski B., & Shamir R. (2003).  The Restriction Scaffold Problem. Journal of Computational Biology. 10(3-4), 385-398.
Kimmel, G., Jordan M. I., Halperin E., Shamir R., & Karp R. M. (2007).  A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies. American Journal of Human Genetics. 81(5), 895-905.
Shamir, R., & Sharan R. (2004).  Optimal Fully Dynamic Algorithms for Cograph Recognition. 329-340.
Davidovich, O.., Kimmel G., Halperin E., & Shamir R. (2009).  Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection. Communications in Information and Systems. 9(3), 269-282.
Pe'er, I., Pupko T., Shamir R., & Sharan R. (2004).  Incomplete Directed Perfect Phylogeny. SIAM Journal on Computing. 33(3), 590-607.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2005).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6), 835-846.
Elkon, R.., Linhart C.., Sharan R., Shamir R., & Shiloh Y.. (2003).  Genome-Wide In-silico Determination of Transcriptional Regulation Modules Controlling Cell Cycle in Human Cells. Genome Research. 773-780.
Adler, I., Karp R. M., & Shamir R. (1986).  A family of simplex variants solving an m*d linear program in expected number of pivot steps depending on d only. Mathematics of Operations Research. 11(4), 570-590.
Pupko, T., Sharan R., Hasegawa M.., Shamir R., & Graur D.. (2003).  Detecting Excess Radical Replacements in Phylogenetic Trees. Gene. 127-135.
Kimmel, G., Sharan R., & Shamir R. (2004).  Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification. INFORMS Journal on Computing.
Shamir, R., Sharan R., & Tsur D.. (2004).  Cluster Graph Modification Problems.
Sharan, R., Maron-Katz A., & Shamir R. (2003).  CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data. Bioinformatics. 1787-1799.
Karp, R. M., & Shamir R. (2000).  Algorithms for Optical Mapping.
Conference Paper
Maron-Katz, A., Ben Simon E., Jacob Y., Rosenberg K., Karp R. M., Hendler T., et al. (2011).  Using Contiguous Bi-Clustering for Data Driven Temporal Analysis of fMRI Based Functional Connectivity. Proceedings of the 4th Annual INCF Neuroinformatics Congress.
Bruckner, S., Hüffner F., Karp R. M., Shamir R., & Sharan R. (2009).  Torque: Topology-Free Querying of Protein Interaction Networks. 74-89.
Halperin, E., Kimmel G., & Shamir R. (2005).  Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy. Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). 195-203.
Tanay, A., Sharan R., Kupiec M., & Shamir R. (2004).  Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data. Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
Ben-Dor, A., Karp R. M., Schwikowski B., & Shamir R. (2002).  The Restriction Scaffold Problem. Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02).
Gat-Viks, I., Shamir R., Karp R. M., & Sharan R. (2004).  Reconstructing Chain Functions in Genetic Networks. Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.

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